Package: PNC 0.1.0

PNC: Phylogenetic Niche Conservatism Analysis for Ecological Communities

Provides functions for testing phylogenetic niche conservatism, a key prerequisite in community assembly studies. The package integrates global functional trait data across major taxonomic groups and implements methods such as Pagel's Lambda and Blomberg's K to quantify phylogenetic signals in ecological communities. Methods are described in Münkemüller et al. (2012) <doi:10.1111/j.2041-210X.2012.00196.x>.

Authors:Yan He [aut, cre], Yu Xia [aut], Rui Yang [aut], Lingfeng Mao [aut]

PNC_0.1.0.tar.gz
PNC_0.1.0.zip(r-4.7)PNC_0.1.0.zip(r-4.6)PNC_0.1.0.zip(r-4.5)
PNC_0.1.0.tgz(r-4.6-any)PNC_0.1.0.tgz(r-4.5-any)
PNC_0.1.0.tar.gz(r-4.7-any)PNC_0.1.0.tar.gz(r-4.6-any)
PNC_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PNC/json (API)

# Install 'PNC' in R:
install.packages('PNC', repos = c('https://temp20250212.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • AmphiBIO - AmphiBIO: Global Amphibian Ecological Traits Database
  • AVONET - AVONET Bird Morphological Dataset
  • BCI - Barro Colorado Island (BCI) dataset
  • COMBINE - COMBINE: Mammal Trait Database
  • Fishlife - Fishlife Dataset
  • HimalayanBirds - Himalayan Birds Dataset
  • ReptTraits - ReptTraits: A Comprehensive Dataset of Ecological Traits in Reptiles
  • TRY - TRY Plant Trait Database

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.70 score 6 scripts 135 downloads 9 exports 41 dependencies

Last updated from:5753bd57b2. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK200
source / vignettesOK184
linux-release-x86_64OK179
macos-release-arm64OK141
macos-oldrel-arm64OK152
windows-develOK120
windows-releaseOK104
windows-oldrelOK111
wasm-releaseOK114

Exports:compnccompnc_robustnesscoverageextract_traitsmerge_datasetpncpnc_robustnesssimulate_K_traitsimulate_lambda_trait

Dependencies:apecliclusterGenerationcodacodetoolscolorspacecombinatcpp11DEoptimdeSolvedigestdoParallelexpmfastmatchforeachgeigergenericsglueigraphiteratorslatticelifecyclemagrittrmapsMASSMatrixmnormtmvtnormncbitnlmenumDerivoptimParallelphangornphytoolspkgconfigquadprogRcpprlangscatterplot3dsubplexvctrs