Package: MultiTraits 0.6.0

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MultiTraits: Analyzing and Visualizing Multidimensional Plant Traits

Implements analytical methods for multidimensional plant traits, including Competitors-Stress tolerators-Ruderals strategy analysis using leaf traits, Leaf-Height-Seed strategy analysis, Niche Periodicity Table analysis, and Trait Network analysis. Provides functions for data analysis, visualization, and network metrics calculation. Methods are based on Grime (1974) <doi:10.1038/250026a0>, Pierce et al. (2017) <doi:10.1111/1365-2435.12882>, Westoby (1998) <doi:10.1023/A:1004327224729>, Winemiller et al. (2015) <doi:10.1111/ele.12462>, He et al. (2020) <doi:10.1016/j.tree.2020.06.003>.

Authors:xxx xx [aut, cre], xxx xx [aut], xxx xxx [aut], xxx xx [aut]

MultiTraits_0.6.0.tar.gz
MultiTraits_0.6.0.zip(r-4.7-any)MultiTraits_0.6.0.zip(r-4.6-any)MultiTraits_0.6.0.zip(r-4.5-any)
MultiTraits_0.6.0.tgz(r-4.6-any)MultiTraits_0.6.0.tgz(r-4.5-any)
MultiTraits_0.6.0.tar.gz(r-4.7-any)MultiTraits_0.6.0.tar.gz(r-4.6-any)
MultiTraits_0.6.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MultiTraits/json (API)

# Install 'MultiTraits' in R:

install.packages('MultiTraits', repos = c('https://temp20250212.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/temp20250212/multitraits/issues

Datasets:

PFF - Plant Functional Traits Dataset from Ponderosa Pine Forests Flora
PFF_tree - Phylogenetic Tree of 133 Plant Species from Pine Forest Flora

On CRAN:

3.70 score 10 scripts 489 downloads 15 exports 87 dependencies

Last updated from:c2656cb6fb. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	188
source / vignettes	OK	434
linux-release	OK	193
macos-release	OK	252
macos-oldrel	OK	231
windows-devel	OK	145
windows-release	OK	123
windows-oldrel	OK	135
wasm-release	OK	135

Exports:CSR CSR_hodgson CSR_plot LHS LHS_plot LHS_strategy_scheme NPT_continuous NPT_continuous_plot NPT_discrete NPT_discrete_plot phylo_correlation PTN PTN_corr PTN_metrics PTN_plot

Dependencies:ape backports base64enc bslib cachem checkmate cli cluster colorspace corrplot cpp11 data.table digest dplyr evaluate farver fastmap fontawesome foreign Formula fs generics ggforce ggplot2 ggraph ggrepel ggsci glue graphlayouts gridExtra gtable highr Hmisc htmlTable htmltools htmlwidgets igraph isoband jquerylib jsonlite knitr labeling lattice lifecycle magrittr MASS Matrix memoise mgcv mime nlme nnet permute pillar pkgconfig polyclip purrr R6 rappdirs RColorBrewer Rcpp RcppArmadillo rlang rmarkdown rpart rstudioapi S7 sass scales scatterplot3d stringi stringr systemfonts tibble tidygraph tidyr tidyselect tinytex tweenr utf8 vctrs vegan viridis viridisLite withr xfun yaml

MultiTraits_tutorial

Rendered fromMultiTraits_tutorial.Rmdusingknitr::rmarkdown

Last update: 2025-10-02
Started: 2025-02-18

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Classify Plant Strategies using Pierce et al. (2017) CSR Method	CSR
Classify Plant Strategies using Hodgson et al. (1999) CSR Method	CSR_hodgson
Create a Ternary Plot for CSR Plant Ecological Strategies	CSR_plot
Calculate LHS (Leaf-Height-Seed) Plant Ecological Strategy Classification	LHS
Create 3D Scatter Plot for LHS Plant Ecological Strategy Data	LHS_plot
Create a table of Leaf-Height-Seed (LHS) strategy types	LHS_strategy_scheme
Continuous Niche Classification Based on Periodic Table of Niches	NPT_continuous
Plot Continuous Niche Classification Results	NPT_continuous_plot
Discrete Niche Classification Based on Periodic Table of Niches	NPT_discrete
Visualize Discrete Niche Classification Tree	NPT_discrete_plot
Plant Functional Traits Dataset from Ponderosa Pine Forests Flora (PFF)	PFF
Phylogenetic Tree of 133 Plant Species from Pine Forest Flora	PFF_tree
Phylogenetically Corrected Correlation Analysis	phylo_correlation
Generate Plant Trait Network	PTN
Calculate and Visualize Plant Trait Correlation Network	PTN_corr
Calculate Node and Global Metrics for Trait Networks	PTN_metrics
Plot Trait Network Graph	PTN_plot